-------------------------------------------------------------- MPI_COMM_WORLD communicator : 1 nodes, 72 MPI tasks COMMUNICATOR NODE # [NODE NAME] : (# OF MPI TASKS) TASK # LIST MPI_COMM_WORLD NODE 0 [ delphi ] : ( 72 MPI TASKS ) 0-71 -------------------------------------------------------------- (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input (t_initf) Read in prof_inparam namelist from: input BUILD DATE: Wed Jun 19 10:08:41 PDT 2019 HOST: BUILT BY: khuck XGC_FLAGS: -D_compile_flags-NOTFOUND GIT INFO: origin git@github.com:PrincetonUniversity/XGC-Devel.git (fetch) Uncommitted changes exist. Git HEAD commit ID: d4ef7d4af17a0bc8eedb1178cc791a8ea6774708 (t_initf) Read in prof_inparam namelist from: input (t_initf) Using profile_disable= F (t_initf) profile_timer= 1 (t_initf) profile_depth_limit= 99999 (t_initf) profile_detail_limit= 2 (t_initf) profile_barrier= F (t_initf) profile_outpe_num= 1 (t_initf) profile_outpe_stride= 1 (t_initf) profile_single_file= F (t_initf) profile_global_stats= T (t_initf) profile_ovhd_measurement= F (t_initf) profile_add_detail= F (t_initf) profile_papi_enable= F call petsc_init call adios_init staging_read_method_name=BP staging_read_method= 0 ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method ERROR: Parameter name num_aggregators is not recognized by the POSIX write method ERROR: Parameter name num_ost is not recognized by the POSIX write method WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) WARN : WARN : config.xml: unknown attribute 'allocate-time' on buffer (ignored) config.xml: unknown attribute 'allocate-time' on buffer (ignored) call adios2_init # of OMP threads = 1 Total simulation processors : 72 setting up......... 0 Read input file sml_param ptl_param eq_param col_param diag_param smooth_param f0_param ptb_3db_param mon_param coupling_init Interplane-Major ordering for sml_comm communicator plane mpi communication inter-plane mpi communication adios mpi communication? end of commnunicator setup particles per thread: 1000000 particles per rank: 1000000 reading...... eq end_flag -1 ptl_num for each MPI rank = 1000000 **** Warning: sml_pol_decomp = .True. enforced due to sml_f0_grid **** memory allocation init_interpolation third difinition part eq_x_slope= -0.13969792868621747 eq_x2_slope= -0.0000000000000000 R range : 0.83999999999999997 2.5000000000000000 Z range : -1.6000000000000001 1.6000000000000001 diag_efld setup setting up grid system..... 0 init_grid: Initializing grid data structure... init_grid: Guess min 0.83999999999999997 -1.6000000000000001 init_grid: Guess max 2.5000000000000000 1.6000000000000001 init_grid: open node file (*.node) :../XGC-1_inputs/d3d_64_8mm_mr10_V2.2.node init_grid: open connectivity file (*.ele) :../XGC-1_inputs/d3d_64_8mm_mr10_V2.2.ele init_grid: grid%nnode = 12458 init_grid: init_guess_table sum(tr_vol) 1.9235233323046603 sum(node_area) 3.0301839264708996 sum(node_vol) 1.9235233323046772 WARNING: E-field in theta direction set to 0 for node: 11547 itr3: -1 itr2: -1 WARNING: E-field in theta direction set to 0 for node: 11576 itr3: -1 itr2: -1 WARNING: E-field in psi direction set to 0 for node: 11579 itr1: -1 itr2: -1 WARNING: E-field in theta direction set to 0 for node: 11639 itr3: -1 itr2: -1 WARNING: E-field in theta direction set to 0 for node: 11772 itr3: -1 itr2: -1 WARNING: E-field in psi direction set to 0 for node: 11810 itr1: -1 itr2: -1 WARNING: E-field in theta direction set to 0 for node: 11831 itr3: -1 itr2: -1 WARNING: E-field in psi direction set to 0 for node: 11833 itr1: -1 itr2: -1 WARNING: E-field in psi direction set to 0 for node: 11877 itr1: -1 itr2: -1 init_grid: open flux-surface file :../XGC-1_inputs/dummy At line 557 of file /home/users/khuck/src/XGC-Devel/XGC_core/search.F90 (unit = 2003) Fortran runtime error: Cannot open file '../XGC-1_inputs/dummy': No such file or directory Error termination. Backtrace: #0 0x7fd6fb3ffdf4 in already_open at ../../../gcc-8.1.0/libgfortran/io/open.c:706 #1 0x4b8584 in __grid_class_MOD_init_grid at /home/users/khuck/src/XGC-Devel/XGC_core/search.F90:557 #2 0x47a1cf in __setup_module_MOD_setup at /home/users/khuck/src/XGC-Devel/XGC1/setup.F90:97 #3 0x411c28 in xgc1_3 at /home/users/khuck/src/XGC-Devel/XGC1/es_main.F90:153 #4 0x40ac6c in main at /home/users/khuck/src/XGC-Devel/XGC1/es_main.F90:28